pyEELSMODEL
Contents:
What is pyEELSMODEL
Installing
Introduction to pyEELSMODEL
Coreloss Example
pyEELSMODEL package
Acknowledgments
pyEELSMODEL
Index
Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
a0() (in module pyEELSMODEL.misc.physical_constants)
A_matrix (pyEELSMODEL.fitters.linear_fitter.LinearFitter property)
acq_time (pyEELSMODEL.core.spectrum.Spectrum property)
add_figure() (pyEELSMODEL.misc.pdf_maker.PDF method)
add_quantification_method() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
add_shift() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
addcomponent() (pyEELSMODEL.core.model.Model method)
AfterGlow (class in pyEELSMODEL.components.afterglow)
Align (class in pyEELSMODEL.operators.aligns.align)
align() (pyEELSMODEL.operators.aligns.align.Align method)
align_zlp() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
AlignCrossCorrelation (class in pyEELSMODEL.operators.aligns.aligncrosscorrelation)
AlignZeroLoss (class in pyEELSMODEL.operators.aligns.alignzeroloss)
allTags (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
apply_dark() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
apply_dark_and_gain() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
AreaSelection (class in pyEELSMODEL.operators.areaselection)
autofit() (pyEELSMODEL.components.exponential.Exponential method)
(pyEELSMODEL.components.powerlaw.PowerLaw method)
autofit1() (pyEELSMODEL.components.powerlaw.PowerLaw method)
autofit_() (pyEELSMODEL.components.powerlaw.PowerLaw method)
autofit_areas() (pyEELSMODEL.components.powerlaw.PowerLaw method)
autofit_matrix() (pyEELSMODEL.components.powerlaw.PowerLaw method)
autofit_twowindow() (pyEELSMODEL.components.powerlaw.PowerLaw method)
B
BackgroundRemoval (class in pyEELSMODEL.operators.backgroundremoval)
bad_index() (pyEELSMODEL.core.spectrum.Spectrum method)
boundaryOK() (pyEELSMODEL.core.parameter.Parameter method)
bounds_lsq() (pyEELSMODEL.fitters.lsqfitter.LSQFitter method)
C
c() (in module pyEELSMODEL.misc.physical_constants)
calculate() (pyEELSMODEL.components.afterglow.AfterGlow method)
(pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
(pyEELSMODEL.components.exponential.Exponential method)
(pyEELSMODEL.components.fast_background.FastBG2 method)
(pyEELSMODEL.components.fast_background.FastBG3 method)
(pyEELSMODEL.components.fixedpattern.FixedPattern method)
(pyEELSMODEL.components.gaussian.Gaussian method)
(pyEELSMODEL.components.gdoslin.GDOSLin method)
(pyEELSMODEL.components.linear.Linear method)
(pyEELSMODEL.components.linear_background.LinearBG method)
(pyEELSMODEL.components.lorentzian.Lorentzian method)
(pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method)
(pyEELSMODEL.components.MScatter.mscatter.Mscatter method)
(pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method)
(pyEELSMODEL.components.offset.Offset method)
(pyEELSMODEL.components.plasmon.Plasmon method)
(pyEELSMODEL.components.polynomial.Polynomial method)
(pyEELSMODEL.components.powerlaw.PowerLaw method)
(pyEELSMODEL.components.voigt.Voigt method)
(pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
calculate_A_matrix() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method)
(pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
calculate_cross_section() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.CLedge.dummymodel.DummyEdge method)
(pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method)
(pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
calculate_derivmatrix() (pyEELSMODEL.core.fitter.Fitter method)
calculate_integral_per_parameter() (pyEELSMODEL.components.gdoslin.GDOSLin method)
calculate_mask_from_coords() (pyEELSMODEL.operators.areaselection.AreaSelection method)
calculate_model() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
calculate_multi() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
calculate_plasmon() (pyEELSMODEL.components.plasmon.Plasmon method)
calculate_raw() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method)
calculate_spectra() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
calculate_w_padding() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method)
calculate_weights() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
calculate_y_vector() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
calibrate_energy_axis() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method)
CalibrateSpectrum (class in pyEELSMODEL.operators.calibratespectrum)
candolintrick() (pyEELSMODEL.core.fitter.Fitter method)
characteristic_angle() (in module pyEELSMODEL.misc.physical_constants)
check_maximum_edge() (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
check_multispectra_validity() (pyEELSMODEL.operators.splice.Splice method)
check_valid_other_spectra() (pyEELSMODEL.operators.aligns.align.Align method)
Component (class in pyEELSMODEL.core.component)
componentshow() (pyEELSMODEL.core.model.Model method)
connect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
convergence_correction_factor() (in module pyEELSMODEL.misc.hydrogen_gdos)
convexity_constraints_necessary() (pyEELSMODEL.components.linear_background.LinearBG method)
convexity_constraints_nonneg() (pyEELSMODEL.components.linear_background.LinearBG method)
convexity_constraints_sufficient() (pyEELSMODEL.components.linear_background.LinearBG method)
convolute_A_matrix() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
convolute_A_matrix_() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
copy() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.parameter.Parameter method)
(pyEELSMODEL.core.spectrum.Spectrum method)
CoreLossEdge (class in pyEELSMODEL.components.CLedge.coreloss_edge)
CoreLossSimulator (class in pyEELSMODEL.operators.simulator.coreloss_simulator)
correction_factor_kohl() (in module pyEELSMODEL.misc.hydrogen_gdos)
correlationmap (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property)
couple() (pyEELSMODEL.core.parameter.Parameter method)
couple_parameter_to_edge() (pyEELSMODEL.components.gdoslin.GDOSLin method)
covariance_matrix (pyEELSMODEL.core.fitter.Fitter property)
createmodelinfo() (pyEELSMODEL.core.fitter.Fitter method)
CRLB() (pyEELSMODEL.core.fitter.Fitter method)
CRLB_map() (pyEELSMODEL.core.fitter.Fitter method)
CRLB_ratio() (pyEELSMODEL.core.fitter.Fitter method)
D
dataOffset (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
dataShape (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
dataSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
dataType (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
dec2bin() (in module pyEELSMODEL.components.linear_background)
Deconvolution (class in pyEELSMODEL.operators.deconvolutions.deconvolution)
deconvolve() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method)
(pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method)
define_new_region() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
degreesoffreedom() (pyEELSMODEL.core.fitter.Fitter method)
determine_edge_positions() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method)
determine_fast_fit_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
determine_fast_shift() (pyEELSMODEL.operators.aligns.fastalignzeroloss.FastAlignZeroLoss method)
determine_input_area() (pyEELSMODEL.operators.areaselection.AreaSelection method)
determine_multi_fast_fit_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
determine_shift() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method)
disconnect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
dispersion (pyEELSMODEL.core.spectrum.Spectrum property)
dmReader() (in module pyEELSMODEL.io_tools.dm_ncempy)
do_linear_fitting (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
do_procedure() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
dolintrick() (pyEELSMODEL.core.fitter.Fitter method)
dsigma_dE_from_GOSarray() (in module pyEELSMODEL.misc.hs_gdos)
dsigma_dE_from_GOSarray_approx() (in module pyEELSMODEL.misc.hs_gdos)
dsigma_dE_from_GOSarray_bound() (in module pyEELSMODEL.misc.hs_gdos)
dsigma_dE_HS() (in module pyEELSMODEL.misc.hs_gdos)
dsigma_dE_hydrogenic() (in module pyEELSMODEL.misc.hydrogen_gdos)
DummyEdge (class in pyEELSMODEL.components.CLedge.dummymodel)
DummyEdgeCombined (class in pyEELSMODEL.components.CLedge.dummymodelcombined)
E
e() (in module pyEELSMODEL.misc.physical_constants)
edge_by_onset() (pyEELSMODEL.components.CLedge.dummymodel.DummyEdge class method)
ElementalQuantification (class in pyEELSMODEL.operators.quantification.elemental_quantification)
energy_axis (pyEELSMODEL.core.spectrum.Spectrum property)
erase() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
eshift (pyEELSMODEL.core.spectrum.Spectrum property)
estimate_autofit_powerlaw() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
estimate_sampling() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
estimate_start_param() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
estimate_start_param_multi() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
estimate_start_parameters() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
estimator (pyEELSMODEL.fitters.lsqfitter.LSQFitter property)
(pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property)
ExperimentalEdgeExtractor (class in pyEELSMODEL.operators.quantification.extract_experimental_edge)
Exponential (class in pyEELSMODEL.components.exponential)
exponential_function() (pyEELSMODEL.components.exponential.Exponential method)
extract_edge() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
extract_vacuum() (pyEELSMODEL.operators.estimate_thickness.ThicknessEstimator method)
F
fast_align() (pyEELSMODEL.operators.aligns.align.Align method)
fast_background() (pyEELSMODEL.components.fast_background.FastBG2 method)
fast_background3() (pyEELSMODEL.components.fast_background.FastBG3 method)
fast_calculate_multi() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
fast_fit (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
FastAlignZeroLoss (class in pyEELSMODEL.operators.aligns.fastalignzeroloss)
FastBG2 (class in pyEELSMODEL.components.fast_background)
FastBG3 (class in pyEELSMODEL.components.fast_background)
fft_phys() (in module pyEELSMODEL.operators.deconvolutions.gaussianmodifier)
fid (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
file_name (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
file_path (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
fileDM (class in pyEELSMODEL.io_tools.dm_ncempy)
fileSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
firstderivative() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
fit_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
fit_align_other() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
fit_zlp() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
Fitter (class in pyEELSMODEL.core.fitter)
fitter (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss property)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval property)
fittertype (pyEELSMODEL.core.fitter.Fitter property)
FixedPattern (class in pyEELSMODEL.components.fixedpattern)
from_numpy() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method)
(pyEELSMODEL.core.spectrum.Spectrum class method)
fromfile() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
G
gamma() (in module pyEELSMODEL.misc.physical_constants)
Gaussian (class in pyEELSMODEL.components.gaussian)
gaussian() (in module pyEELSMODEL.misc.hs_gdos)
gaussian_3d() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
gaussian_function() (pyEELSMODEL.components.gaussian.Gaussian method)
GaussianModifier (class in pyEELSMODEL.operators.deconvolutions.gaussianmodifier)
gaussianmodifier() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method)
gaussiansmooth() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
gdos_k() (in module pyEELSMODEL.misc.hydrogen_gdos)
gdos_l() (in module pyEELSMODEL.misc.hydrogen_gdos)
GDOSLin (class in pyEELSMODEL.components.gdoslin)
gdoslin_from_edge() (pyEELSMODEL.components.gdoslin.GDOSLin class method)
get_background() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
get_background_model() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
get_bounds() (pyEELSMODEL.core.fitter.Fitter method)
get_convergence_correction_factor() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
get_convex_boundaries() (pyEELSMODEL.components.linear_background.LinearBG method)
get_CRLB() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
get_EK() (in module pyEELSMODEL.misc.hydrogen_gdos)
get_elemental_maps() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
get_elements() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
get_elements_dir() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
get_energy_index() (pyEELSMODEL.core.spectrum.Spectrum method)
get_experimental_edge() (pyEELSMODEL.core.fitter.Fitter method)
get_figname() (pyEELSMODEL.misc.pdf_maker.PDF method)
get_first_higher_then() (pyEELSMODEL.core.spectrum.Spectrum method)
get_fitting_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
get_fwhm() (pyEELSMODEL.components.voigt.Voigt method)
get_IE1() (in module pyEELSMODEL.misc.hydrogen_gdos)
get_IE3() (in module pyEELSMODEL.misc.hydrogen_gdos)
get_indextitle() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
get_interval() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
get_ismultiplier() (pyEELSMODEL.core.component.Component method)
get_jump_ratio_map() (pyEELSMODEL.core.fitter.Fitter method)
get_map() (pyEELSMODEL.core.fitter.Fitter method)
get_map_results() (pyEELSMODEL.core.fitter.Fitter method)
get_max() (pyEELSMODEL.core.spectrum.Spectrum method)
get_mean_from_area() (pyEELSMODEL.operators.areaselection.AreaSelection method)
get_min() (pyEELSMODEL.core.spectrum.Spectrum method)
get_multimodels() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
get_multispectrumshape() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
get_new_energy_axis() (pyEELSMODEL.operators.splice.Splice method)
get_numerical_fwhm() (pyEELSMODEL.core.spectrum.Spectrum method)
get_param_index() (pyEELSMODEL.core.fitter.Fitter method)
get_powerLaw_extrapolation() (in module pyEELSMODEL.misc.hs_gdos)
get_qmin_max() (in module pyEELSMODEL.misc.hydrogen_gdos)
get_rlist() (pyEELSMODEL.components.linear_background.LinearBG method)
get_savename() (pyEELSMODEL.misc.pdf_maker.PDF method)
get_specparameters() (pyEELSMODEL.core.spectrum.Spectrum method)
get_spectrumshape() (pyEELSMODEL.core.spectrum.Spectrum method)
get_start_parameters() (pyEELSMODEL.core.fitter.Fitter method)
get_time_name() (pyEELSMODEL.misc.pdf_maker.PDF method)
get_XU() (in module pyEELSMODEL.misc.hydrogen_gdos)
getallparameters() (pyEELSMODEL.core.model.Model method)
getcanconvolute() (pyEELSMODEL.core.component.Component method)
getcomponentbyparameter() (pyEELSMODEL.core.model.Model method)
getcomponents() (pyEELSMODEL.core.model.Model method)
getcontroller() (pyEELSMODEL.core.parameter.Parameter method)
getconvolutor() (pyEELSMODEL.core.model.Model method)
getcouplingfactor() (pyEELSMODEL.core.parameter.Parameter method)
getDataset() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
getdescription() (pyEELSMODEL.core.component.Component method)
getdisplayname() (pyEELSMODEL.core.component.Component method)
getdolintrick() (pyEELSMODEL.core.fitter.Fitter method)
getdoresidual() (pyEELSMODEL.core.fitter.Fitter method)
geteshift() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
getfreelinparameters() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
getfreenonlinparameters() (pyEELSMODEL.core.model.Model method)
getfreeparameters() (pyEELSMODEL.core.model.Model method)
getgosenergy() (in module pyEELSMODEL.misc.hs_gdos)
getgosq() (in module pyEELSMODEL.misc.hs_gdos)
getgradient() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.exponential.Exponential method)
(pyEELSMODEL.components.fast_background.FastBG2 method)
(pyEELSMODEL.components.fast_background.FastBG3 method)
(pyEELSMODEL.components.fixedpattern.FixedPattern method)
(pyEELSMODEL.components.gaussian.Gaussian method)
(pyEELSMODEL.components.linear.Linear method)
(pyEELSMODEL.components.linear_background.LinearBG method)
(pyEELSMODEL.components.lorentzian.Lorentzian method)
(pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method)
(pyEELSMODEL.components.offset.Offset method)
(pyEELSMODEL.components.polynomial.Polynomial method)
(pyEELSMODEL.components.powerlaw.PowerLaw method)
(pyEELSMODEL.components.voigt.Voigt method)
(pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
gethasgradient() (pyEELSMODEL.core.parameter.Parameter method)
gethasmultiplier() (pyEELSMODEL.core.component.Component method)
getinterpolatedgos() (in module pyEELSMODEL.misc.hs_gdos)
getinterpolatedq() (in module pyEELSMODEL.misc.hs_gdos)
getlabelist() (pyEELSMODEL.core.fitter.Fitter method)
getlowerbound() (pyEELSMODEL.core.parameter.Parameter method)
getmaxenergy() (pyEELSMODEL.core.spectrum.Spectrum method)
getmaxindex() (pyEELSMODEL.core.spectrum.Spectrum method)
getMemmap() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
getMetadata() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
getmultiplier() (pyEELSMODEL.core.component.Component method)
getname() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.parameter.Parameter method)
getnonexcludedpoints() (pyEELSMODEL.core.spectrum.Spectrum method)
getnumcomponents() (pyEELSMODEL.core.model.Model method)
getnumfreeparameters() (pyEELSMODEL.core.model.Model method)
getnumparameters() (pyEELSMODEL.core.model.Model method)
getparameter() (pyEELSMODEL.core.component.Component method)
getprogress() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
getpurename() (pyEELSMODEL.core.parameter.Parameter method)
getshifter() (pyEELSMODEL.core.component.Component method)
getSlice() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
getspectrumshape() (pyEELSMODEL.core.multispectrum.MultiSpectrumshape method)
getstatus() (pyEELSMODEL.core.fitter.Fitter method)
getThumbnail() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
gettolerance() (pyEELSMODEL.core.fitter.Fitter method)
getupperbound() (pyEELSMODEL.core.parameter.Parameter method)
getvalue() (pyEELSMODEL.core.parameter.Parameter method)
H
h() (in module pyEELSMODEL.misc.physical_constants)
harmonic_space() (in module pyEELSMODEL.components.linear_background)
has_parameter() (pyEELSMODEL.core.component.Component method)
hasconvolutor() (pyEELSMODEL.core.model.Model method)
hasmultiplier() (pyEELSMODEL.core.model.Model method)
hasshifter() (pyEELSMODEL.core.model.Model method)
hbar() (in module pyEELSMODEL.misc.physical_constants)
HydrogenicCoreLossEdge (class in pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge)
I
ifft_phys() (in module pyEELSMODEL.operators.deconvolutions.gaussianmodifier)
include_areas() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
index_shift (pyEELSMODEL.operators.aligns.align.Align property)
indexOK() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.multispectrum.MultiSpectrum method)
information_matrix (pyEELSMODEL.core.fitter.Fitter property)
init_poisson_error() (pyEELSMODEL.core.spectrum.Spectrum method)
initDOS() (pyEELSMODEL.components.gdoslin.GDOSLin method)
input_map (pyEELSMODEL.operators.areaselection.AreaSelection property)
integrate() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
interactivevalue() (pyEELSMODEL.core.parameter.Parameter method)
interp (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property)
interp_to_other_energy_axis() (pyEELSMODEL.core.spectrum.Spectrum method)
interpolate_int() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method)
intitialize() (pyEELSMODEL.misc.pdf_maker.PDF method)
isbound() (pyEELSMODEL.core.parameter.Parameter method)
ischangeable() (pyEELSMODEL.core.parameter.Parameter method)
ischanged() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.core.parameter.Parameter method)
iscoupled() (pyEELSMODEL.core.parameter.Parameter method)
isdisplayed() (pyEELSMODEL.core.parameter.Parameter method)
islinear() (pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.core.parameter.Parameter method)
islocked() (pyEELSMODEL.core.model.Model method)
iterations (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution property)
J
jacobian (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property)
jacobian_LSQ() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)
jacobian_ML() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)
joule_to_eV() (in module pyEELSMODEL.misc.physical_constants)
K
KohlLossEdge (class in pyEELSMODEL.components.CLedge.kohl_coreloss_edge)
KohlLossEdgeCombined (class in pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined)
L
likelihood_ratio() (pyEELSMODEL.core.fitter.Fitter method)
Linear (class in pyEELSMODEL.components.linear)
linear_background() (pyEELSMODEL.components.linear_background.LinearBG method)
linear_function() (pyEELSMODEL.components.linear.Linear method)
linear_interpolation() (in module pyEELSMODEL.misc.hs_gdos)
LinearBG (class in pyEELSMODEL.components.linear_background)
LinearFitter (class in pyEELSMODEL.fitters.linear_fitter)
load() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method)
(pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.multispectrum.MultiSpectrum class method)
(pyEELSMODEL.core.spectrum.Spectrum class method)
load_dm() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method)
(pyEELSMODEL.core.spectrum.Spectrum class method)
load_elements_and_edges() (in module pyEELSMODEL.io_tools.hdf5_io)
load_h5py() (in module pyEELSMODEL.io_tools.hdf5_io)
load_hdf5() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method)
(pyEELSMODEL.core.spectrum.Spectrum class method)
load_hspy() (in module pyEELSMODEL.io_tools.hdf5_io)
(pyEELSMODEL.core.multispectrum.MultiSpectrum class method)
(pyEELSMODEL.core.spectrum.Spectrum class method)
loadmsa() (pyEELSMODEL.core.spectrum.Spectrum class method)
lock() (pyEELSMODEL.core.model.Model method)
log_ratio_method() (pyEELSMODEL.operators.estimate_thickness.ThicknessEstimator method)
lorentz() (pyEELSMODEL.components.lorentzian.Lorentzian method)
lorentz_sq() (pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method)
Lorentzian (class in pyEELSMODEL.components.lorentzian)
Lorentzian_sq (class in pyEELSMODEL.components.lorentzian_sq)
LRtestconfidence() (pyEELSMODEL.core.fitter.Fitter method)
LRtestconfidence_string() (pyEELSMODEL.core.fitter.Fitter method)
lsq_function() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)
LSQFitter (class in pyEELSMODEL.fitters.lsqfitter)
M
m0() (in module pyEELSMODEL.misc.physical_constants)
main() (in module pyEELSMODEL.tests.component_tests.test_corelossedge)
(in module pyEELSMODEL.tests.component_tests.test_exponential)
(in module pyEELSMODEL.tests.component_tests.test_fixedpattern)
(in module pyEELSMODEL.tests.component_tests.test_gaussian)
(in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)
(in module pyEELSMODEL.tests.component_tests.test_polynomial)
(in module pyEELSMODEL.tests.component_tests.test_powerlaw)
(in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
(in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter)
(in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter)
(in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_background_removal)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
make_artificial_dataset() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
make_background() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
make_background_model() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
make_circular_mask() (in module pyEELSMODEL.misc.data_simulator)
make_coreloss() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
(pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
make_elements() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
make_finestructure() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
make_fitter() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
make_lowloss() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
make_model() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
make_mscatter() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
make_multispectrum() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
(in module pyEELSMODEL.tests.operator_tests.test_background_removal)
make_multispectrum_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
make_pdf_result() (pyEELSMODEL.operators.aligns.align.Align method)
make_rectangular_mask() (in module pyEELSMODEL.misc.data_simulator)
make_zeroloss_model() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
manageparameters() (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
map_to_line() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
mask (pyEELSMODEL.operators.areaselection.AreaSelection property)
max_points (pyEELSMODEL.operators.areaselection.AreaSelection property)
mean() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
metadata (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
method (pyEELSMODEL.fitters.lsqfitter.LSQFitter property)
(pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property)
MinimizeFitter (class in pyEELSMODEL.fitters.minimizefitter)
mirrored_zlp() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
MLE_function() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)
Model (class in pyEELSMODEL.core.model)
model (pyEELSMODEL.core.fitter.Fitter property)
(pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss property)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval property)
model_to_multispectrum() (pyEELSMODEL.core.fitter.Fitter method)
model_to_multispectrum_with_comps() (pyEELSMODEL.core.fitter.Fitter method)
model_to_multispectrum_without_comps() (pyEELSMODEL.core.fitter.Fitter method)
model_type (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval property)
modified_fixedpattern() (pyEELSMODEL.components.fixedpattern.FixedPattern method)
module
pyEELSMODEL.components
pyEELSMODEL.components.afterglow
pyEELSMODEL.components.CLedge
pyEELSMODEL.components.CLedge.coreloss_edge
pyEELSMODEL.components.CLedge.dummymodel
pyEELSMODEL.components.CLedge.dummymodelcombined
pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge
pyEELSMODEL.components.CLedge.kohl_coreloss_edge
pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined
pyEELSMODEL.components.CLedge.zezhong_coreloss_edge
pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined
pyEELSMODEL.components.exponential
pyEELSMODEL.components.fast_background
pyEELSMODEL.components.fixedpattern
pyEELSMODEL.components.gaussian
pyEELSMODEL.components.gdoslin
pyEELSMODEL.components.linear
pyEELSMODEL.components.linear_background
pyEELSMODEL.components.lorentzian
pyEELSMODEL.components.lorentzian_sq
pyEELSMODEL.components.MScatter
pyEELSMODEL.components.MScatter.mscatter
pyEELSMODEL.components.MScatter.mscatterfft
pyEELSMODEL.components.offset
pyEELSMODEL.components.plasmon
pyEELSMODEL.components.polynomial
pyEELSMODEL.components.powerlaw
pyEELSMODEL.components.voigt
pyEELSMODEL.core
pyEELSMODEL.core.component
pyEELSMODEL.core.fitter
pyEELSMODEL.core.model
pyEELSMODEL.core.multispectrum
pyEELSMODEL.core.operator
pyEELSMODEL.core.parameter
pyEELSMODEL.core.spectrum
pyEELSMODEL.fitters
pyEELSMODEL.fitters.linear_fitter
pyEELSMODEL.fitters.lsqfitter
pyEELSMODEL.fitters.minimizefitter
pyEELSMODEL.io_tools
pyEELSMODEL.io_tools.dm_ncempy
pyEELSMODEL.io_tools.hdf5_io
pyEELSMODEL.misc
pyEELSMODEL.misc.data_simulator
pyEELSMODEL.misc.hs_gdos
pyEELSMODEL.misc.hydrogen_gdos
pyEELSMODEL.misc.pdf_maker
pyEELSMODEL.misc.physical_constants
pyEELSMODEL.operators
pyEELSMODEL.operators.aligns
pyEELSMODEL.operators.aligns.align
pyEELSMODEL.operators.aligns.aligncrosscorrelation
pyEELSMODEL.operators.aligns.alignzeroloss
pyEELSMODEL.operators.aligns.fastalignzeroloss
pyEELSMODEL.operators.areaselection
pyEELSMODEL.operators.backgroundremoval
pyEELSMODEL.operators.calibratespectrum
pyEELSMODEL.operators.deconvolutions
pyEELSMODEL.operators.deconvolutions.deconvolution
pyEELSMODEL.operators.deconvolutions.gaussianmodifier
pyEELSMODEL.operators.deconvolutions.richardson_lucy
pyEELSMODEL.operators.estimate_thickness
pyEELSMODEL.operators.multispectrumvisualizer
pyEELSMODEL.operators.quantification
pyEELSMODEL.operators.quantification.elemental_quantification
pyEELSMODEL.operators.quantification.extract_experimental_edge
pyEELSMODEL.operators.simulator
pyEELSMODEL.operators.simulator.coreloss_simulator
pyEELSMODEL.operators.splice
pyEELSMODEL.operators.zlpremoval
pyEELSMODEL.tests
pyEELSMODEL.tests.component_tests
pyEELSMODEL.tests.component_tests.test_corelossedge
pyEELSMODEL.tests.component_tests.test_exponential
pyEELSMODEL.tests.component_tests.test_fixedpattern
pyEELSMODEL.tests.component_tests.test_gaussian
pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge
pyEELSMODEL.tests.component_tests.test_polynomial
pyEELSMODEL.tests.component_tests.test_powerlaw
pyEELSMODEL.tests.fitter_tests
pyEELSMODEL.tests.fitter_tests.test_linearfit
pyEELSMODEL.tests.fitter_tests.test_lsqfitter
pyEELSMODEL.tests.fitter_tests.test_minimizefitter
pyEELSMODEL.tests.io_tools_tests
pyEELSMODEL.tests.operator_tests
pyEELSMODEL.tests.operator_tests.test_align_cross_correlation
pyEELSMODEL.tests.operator_tests.test_background_removal
pyEELSMODEL.tests.operator_tests.test_zero_loss_align
Mscatter (class in pyEELSMODEL.components.MScatter.mscatter)
MscatterFFT (class in pyEELSMODEL.components.MScatter.mscatterfft)
multi_deconvolve() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method)
(pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method)
multi_fast_fit (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
multi_fit() (pyEELSMODEL.core.fitter.Fitter method)
multi_likelihood_ratio() (pyEELSMODEL.core.fitter.Fitter method)
multi_LRtestconficence() (pyEELSMODEL.core.fitter.Fitter method)
multidata (pyEELSMODEL.core.multispectrum.MultiSpectrum property)
MultiSpectrum (class in pyEELSMODEL.core.multispectrum)
MultiSpectrumIterator (class in pyEELSMODEL.core.multispectrum)
MultiSpectrumshape (class in pyEELSMODEL.core.multispectrum)
MultiSpectrumVisualizer (class in pyEELSMODEL.operators.multispectrumvisualizer)
N
non_linear_fitter (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
normalise() (pyEELSMODEL.core.spectrum.Spectrum method)
numerical_partial_derivative() (pyEELSMODEL.core.fitter.Fitter method)
numObjects (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
O
Offset (class in pyEELSMODEL.components.offset)
offset (pyEELSMODEL.core.spectrum.Spectrum property)
on_key_press() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
on_memory (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
on_motion() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
on_press() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
on_release() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
Operator (class in pyEELSMODEL.core.operator)
order (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
order_coupled_components() (pyEELSMODEL.core.model.Model method)
origin (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
P
padding() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method)
(pyEELSMODEL.core.spectrum.Spectrum method)
(pyEELSMODEL.operators.deconvolutions.deconvolution.Deconvolution method)
Parameter (class in pyEELSMODEL.core.parameter)
parseHeader() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
partial_derivative() (pyEELSMODEL.core.fitter.Fitter method)
(pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
PDF (class in pyEELSMODEL.misc.pdf_maker)
pearson_correlation_matrix() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
perform_alignment() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method)
(pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
(pyEELSMODEL.operators.aligns.fastalignzeroloss.FastAlignZeroLoss method)
perform_fit() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
(pyEELSMODEL.fitters.lsqfitter.LSQFitter method)
(pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)
Plasmon (class in pyEELSMODEL.components.plasmon)
plasmon_function() (pyEELSMODEL.components.plasmon.Plasmon method)
plot() (pyEELSMODEL.core.fitter.Fitter method)
(pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
(pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
plotrect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
poisson_fraction() (pyEELSMODEL.components.plasmon.Plasmon method)
Polynomial (class in pyEELSMODEL.components.polynomial)
PowerLaw (class in pyEELSMODEL.components.powerlaw)
powerlaw() (in module pyEELSMODEL.misc.hs_gdos)
(pyEELSMODEL.components.powerlaw.PowerLaw method)
pppc (pyEELSMODEL.core.spectrum.Spectrum property)
prepare() (pyEELSMODEL.core.model.Model method)
print_parameter_values() (pyEELSMODEL.core.component.Component method)
printall() (pyEELSMODEL.core.parameter.Parameter method)
printcomponents() (pyEELSMODEL.core.model.Model method)
pyEELSMODEL.components
module
pyEELSMODEL.components.afterglow
module
pyEELSMODEL.components.CLedge
module
pyEELSMODEL.components.CLedge.coreloss_edge
module
pyEELSMODEL.components.CLedge.dummymodel
module
pyEELSMODEL.components.CLedge.dummymodelcombined
module
pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge
module
pyEELSMODEL.components.CLedge.kohl_coreloss_edge
module
pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined
module
pyEELSMODEL.components.CLedge.zezhong_coreloss_edge
module
pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined
module
pyEELSMODEL.components.exponential
module
pyEELSMODEL.components.fast_background
module
pyEELSMODEL.components.fixedpattern
module
pyEELSMODEL.components.gaussian
module
pyEELSMODEL.components.gdoslin
module
pyEELSMODEL.components.linear
module
pyEELSMODEL.components.linear_background
module
pyEELSMODEL.components.lorentzian
module
pyEELSMODEL.components.lorentzian_sq
module
pyEELSMODEL.components.MScatter
module
pyEELSMODEL.components.MScatter.mscatter
module
pyEELSMODEL.components.MScatter.mscatterfft
module
pyEELSMODEL.components.offset
module
pyEELSMODEL.components.plasmon
module
pyEELSMODEL.components.polynomial
module
pyEELSMODEL.components.powerlaw
module
pyEELSMODEL.components.voigt
module
pyEELSMODEL.core
module
pyEELSMODEL.core.component
module
pyEELSMODEL.core.fitter
module
pyEELSMODEL.core.model
module
pyEELSMODEL.core.multispectrum
module
pyEELSMODEL.core.operator
module
pyEELSMODEL.core.parameter
module
pyEELSMODEL.core.spectrum
module
pyEELSMODEL.fitters
module
pyEELSMODEL.fitters.linear_fitter
module
pyEELSMODEL.fitters.lsqfitter
module
pyEELSMODEL.fitters.minimizefitter
module
pyEELSMODEL.io_tools
module
pyEELSMODEL.io_tools.dm_ncempy
module
pyEELSMODEL.io_tools.hdf5_io
module
pyEELSMODEL.misc
module
pyEELSMODEL.misc.data_simulator
module
pyEELSMODEL.misc.hs_gdos
module
pyEELSMODEL.misc.hydrogen_gdos
module
pyEELSMODEL.misc.pdf_maker
module
pyEELSMODEL.misc.physical_constants
module
pyEELSMODEL.operators
module
pyEELSMODEL.operators.aligns
module
pyEELSMODEL.operators.aligns.align
module
pyEELSMODEL.operators.aligns.aligncrosscorrelation
module
pyEELSMODEL.operators.aligns.alignzeroloss
module
pyEELSMODEL.operators.aligns.fastalignzeroloss
module
pyEELSMODEL.operators.areaselection
module
pyEELSMODEL.operators.backgroundremoval
module
pyEELSMODEL.operators.calibratespectrum
module
pyEELSMODEL.operators.deconvolutions
module
pyEELSMODEL.operators.deconvolutions.deconvolution
module
pyEELSMODEL.operators.deconvolutions.gaussianmodifier
module
pyEELSMODEL.operators.deconvolutions.richardson_lucy
module
pyEELSMODEL.operators.estimate_thickness
module
pyEELSMODEL.operators.multispectrumvisualizer
module
pyEELSMODEL.operators.quantification
module
pyEELSMODEL.operators.quantification.elemental_quantification
module
pyEELSMODEL.operators.quantification.extract_experimental_edge
module
pyEELSMODEL.operators.simulator
module
pyEELSMODEL.operators.simulator.coreloss_simulator
module
pyEELSMODEL.operators.splice
module
pyEELSMODEL.operators.zlpremoval
module
pyEELSMODEL.tests
module
pyEELSMODEL.tests.component_tests
module
pyEELSMODEL.tests.component_tests.test_corelossedge
module
pyEELSMODEL.tests.component_tests.test_exponential
module
pyEELSMODEL.tests.component_tests.test_fixedpattern
module
pyEELSMODEL.tests.component_tests.test_gaussian
module
pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge
module
pyEELSMODEL.tests.component_tests.test_polynomial
module
pyEELSMODEL.tests.component_tests.test_powerlaw
module
pyEELSMODEL.tests.fitter_tests
module
pyEELSMODEL.tests.fitter_tests.test_linearfit
module
pyEELSMODEL.tests.fitter_tests.test_lsqfitter
module
pyEELSMODEL.tests.fitter_tests.test_minimizefitter
module
pyEELSMODEL.tests.io_tools_tests
module
pyEELSMODEL.tests.operator_tests
module
pyEELSMODEL.tests.operator_tests.test_align_cross_correlation
module
pyEELSMODEL.tests.operator_tests.test_background_removal
module
pyEELSMODEL.tests.operator_tests.test_zero_loss_align
module
Q
quantify_from_edge() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
R
R() (in module pyEELSMODEL.misc.physical_constants)
rebin() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
recalibrate_spectrum() (pyEELSMODEL.core.spectrum.Spectrum method)
reference (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property)
release() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.core.parameter.Parameter method)
releasecoupling() (pyEELSMODEL.core.parameter.Parameter method)
releasemultiplier() (pyEELSMODEL.core.component.Component method)
removecomponent() (pyEELSMODEL.core.model.Model method)
rescale_spectrum() (pyEELSMODEL.core.spectrum.Spectrum method)
reset_exclude_region() (pyEELSMODEL.core.spectrum.Spectrum method)
resetsigmas() (pyEELSMODEL.core.model.Model method)
residuals() (pyEELSMODEL.fitters.lsqfitter.LSQFitter method)
richardsonlucy() (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method)
RichardsonLucyDeconvolution (class in pyEELSMODEL.operators.deconvolutions.richardson_lucy)
S
save() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method)
(pyEELSMODEL.core.component.Component method)
save_hdf5() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
savemodel() (pyEELSMODEL.core.model.Model method)
saveparams() (pyEELSMODEL.core.model.Model method)
scale (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
scaleOrigin (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
scaleUnit (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
secondderivative() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
seek() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
set_bounds() (pyEELSMODEL.core.fitter.Fitter method)
set_dir_path() (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method)
set_edge() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.CLedge.dummymodel.DummyEdge method)
(pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method)
(pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
set_element() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method)
set_exclude_region() (pyEELSMODEL.core.spectrum.Spectrum method)
set_exclude_region_energy() (pyEELSMODEL.core.spectrum.Spectrum method)
set_fit_type() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
set_fit_values() (pyEELSMODEL.core.fitter.Fitter method)
set_fixeddata() (pyEELSMODEL.components.afterglow.AfterGlow method)
(pyEELSMODEL.components.fixedpattern.FixedPattern method)
set_gdos_name() (pyEELSMODEL.components.gdoslin.GDOSLin method)
set_gos_energy_q() (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method)
set_include_region() (pyEELSMODEL.core.spectrum.Spectrum method)
set_include_region_energy() (pyEELSMODEL.core.spectrum.Spectrum method)
set_indices() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
set_information_matrix() (pyEELSMODEL.core.fitter.Fitter method)
set_onset_edge_energies() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method)
set_onset_energy() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
(pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method)
(pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method)
(pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method)
(pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method)
set_start_parameters() (pyEELSMODEL.core.fitter.Fitter method)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
set_Z() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method)
setboundaries() (pyEELSMODEL.core.parameter.Parameter method)
setchangeable() (pyEELSMODEL.core.parameter.Parameter method)
setchanged() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
(pyEELSMODEL.core.parameter.Parameter method)
setcurrentfit() (pyEELSMODEL.core.fitter.Fitter method)
setcurrentmeanspectrum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
setcurrentspectrum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
setdefaults() (pyEELSMODEL.core.parameter.Parameter method)
setdescription() (pyEELSMODEL.core.component.Component method)
setdisplayed() (pyEELSMODEL.core.parameter.Parameter method)
setdisplayname() (pyEELSMODEL.core.component.Component method)
setdoresidual() (pyEELSMODEL.core.fitter.Fitter method)
seteshift() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.model.Model method)
setfraction() (pyEELSMODEL.core.fitter.Fitter method)
sethasgradient() (pyEELSMODEL.core.parameter.Parameter method)
sethasmultiplier() (pyEELSMODEL.core.component.Component method)
setlinear() (pyEELSMODEL.core.parameter.Parameter method)
setlowerbound() (pyEELSMODEL.core.parameter.Parameter method)
setmaxstep() (pyEELSMODEL.core.fitter.Fitter method)
setminstep() (pyEELSMODEL.core.fitter.Fitter method)
setmultiplier() (pyEELSMODEL.core.component.Component method)
setname() (pyEELSMODEL.core.parameter.Parameter method)
(pyEELSMODEL.core.spectrum.Spectrum method)
setnmax() (pyEELSMODEL.core.fitter.Fitter method)
settolerance() (pyEELSMODEL.core.fitter.Fitter method)
setunchanged() (pyEELSMODEL.core.component.Component method)
(pyEELSMODEL.core.parameter.Parameter method)
setupperbound() (pyEELSMODEL.core.parameter.Parameter method)
setusegradients() (pyEELSMODEL.core.fitter.Fitter method)
setvalue() (pyEELSMODEL.core.parameter.Parameter method)
setvisible() (pyEELSMODEL.core.component.Component method)
shift (pyEELSMODEL.operators.aligns.align.Align property)
show() (pyEELSMODEL.core.component.Component method)
show_alignment_result() (pyEELSMODEL.operators.aligns.align.Align method)
show_area() (pyEELSMODEL.operators.areaselection.AreaSelection method)
show_average_spectra() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
show_calibration_fit() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method)
show_coefficients() (pyEELSMODEL.core.fitter.Fitter method)
show_covariance_matrix() (pyEELSMODEL.core.fitter.Fitter method)
show_elements_maps() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
show_excluded_region() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
(pyEELSMODEL.core.spectrum.Spectrum method)
show_fit_result() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
show_map_result() (pyEELSMODEL.core.fitter.Fitter method)
show_mirror_result() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method)
show_pearson_correlation() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method)
show_real_energies() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method)
show_regions() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method)
show_shift() (pyEELSMODEL.operators.aligns.align.Align method)
show_signal_range() (pyEELSMODEL.operators.aligns.align.Align method)
show_variance() (pyEELSMODEL.core.fitter.Fitter method)
sigma (pyEELSMODEL.core.parameter.Parameter property)
signal_range (pyEELSMODEL.operators.aligns.align.Align property)
(pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property)
(pyEELSMODEL.operators.zlpremoval.ZLPRemoval property)
simulate_data() (in module pyEELSMODEL.misc.data_simulator)
simulate_multispectrum() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method)
Spectrum (class in pyEELSMODEL.core.spectrum)
spectrum (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property)
Spectrumshape (class in pyEELSMODEL.core.spectrum)
speed_electron() (in module pyEELSMODEL.misc.physical_constants)
Splice (class in pyEELSMODEL.operators.splice)
splice_multispectra() (pyEELSMODEL.operators.splice.Splice method)
splice_spectra() (pyEELSMODEL.operators.splice.Splice method)
stop() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)
subpixel (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property)
sum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
swap_xy() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
T
T() (in module pyEELSMODEL.misc.physical_constants)
tell() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
test_A_matrix() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_align_crosscor() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
test_align_crosscor_zlp() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
test_background_subtraction() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_calculate() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)
test_CRLB() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter)
test_cross_correlation() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_cross_correlation_signal_range() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_exponential() (in module pyEELSMODEL.tests.component_tests.test_exponential)
test_exponential_autofit() (in module pyEELSMODEL.tests.component_tests.test_exponential)
test_exponential_gradient() (in module pyEELSMODEL.tests.component_tests.test_exponential)
test_fast_align() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_fast_align_1() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_fast_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_fast_align_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
test_fast_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_fit_align() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_fit_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
test_fit_align_lorentz() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_fit_align_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
test_fixed_pattern() (in module pyEELSMODEL.tests.component_tests.test_fixedpattern)
test_fixed_pattern_gradient() (in module pyEELSMODEL.tests.component_tests.test_fixedpattern)
test_gaussian() (in module pyEELSMODEL.tests.component_tests.test_gaussian)
test_gaussian_gradient() (in module pyEELSMODEL.tests.component_tests.test_gaussian)
test_gradient() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)
test_include_areas() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_init() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_init_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation)
(in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align)
test_jacobian() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter)
test_LSQ_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter)
test_make_model_type() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_MLE_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter)
test_model_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_multifit() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_multifit_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_multifit_multiconvolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_nonlinear() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
(in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter)
test_perform_fit_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit)
test_polynomial() (in module pyEELSMODEL.tests.component_tests.test_polynomial)
test_polynomial_gradient() (in module pyEELSMODEL.tests.component_tests.test_polynomial)
test_powerlaw() (in module pyEELSMODEL.tests.component_tests.test_powerlaw)
test_powerlaw_autofit() (in module pyEELSMODEL.tests.component_tests.test_powerlaw)
test_powerlaw_gradient() (in module pyEELSMODEL.tests.component_tests.test_powerlaw)
test_reset_exclude_after_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_set_edge() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)
test_set_element() (in module pyEELSMODEL.tests.component_tests.test_corelossedge)
test_set_fit_type() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_set_indices() (in module pyEELSMODEL.tests.operator_tests.test_background_removal)
test_set_onset_energy() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)
test_set_Z() (in module pyEELSMODEL.tests.component_tests.test_corelossedge)
test_use_bounds() (in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter)
ThicknessEstimator (class in pyEELSMODEL.operators.estimate_thickness)
thumbnail (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
to_logarithm() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
U
update_eels() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
update_multispectra() (pyEELSMODEL.operators.aligns.align.Align method)
updaterect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)
upsample() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)
use_bounds (pyEELSMODEL.fitters.lsqfitter.LSQFitter property)
usegradients (pyEELSMODEL.core.fitter.Fitter property)
V
verbose (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
visualize_autofit() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)
Voigt (class in pyEELSMODEL.components.voigt)
voigt() (pyEELSMODEL.components.voigt.Voigt method)
W
weights (pyEELSMODEL.operators.splice.Splice property)
writeTags() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)
X
xSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
Y
y_vector (pyEELSMODEL.fitters.linear_fitter.LinearFitter property)
ySize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
Z
zero_index (pyEELSMODEL.operators.aligns.align.Align property)
ZezhongCoreLossEdge (class in pyEELSMODEL.components.CLedge.zezhong_coreloss_edge)
ZezhongCoreLossEdgeCombined (class in pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined)
ZLPRemoval (class in pyEELSMODEL.operators.zlpremoval)
Zs_k() (in module pyEELSMODEL.misc.physical_constants)
zSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)
zSize2 (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)