Index

A

a0() (in module pyEELSMODEL.misc.physical_constants) A_matrix (pyEELSMODEL.fitters.linear_fitter.LinearFitter property) acq_time (pyEELSMODEL.core.spectrum.Spectrum property) add_figure() (pyEELSMODEL.misc.pdf_maker.PDF method) add_quantification_method() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) add_shift() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) addcomponent() (pyEELSMODEL.core.model.Model method) AfterGlow (class in pyEELSMODEL.components.afterglow) Align (class in pyEELSMODEL.operators.aligns.align) align() (pyEELSMODEL.operators.aligns.align.Align method) align_zlp() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) AlignCrossCorrelation (class in pyEELSMODEL.operators.aligns.aligncrosscorrelation) AlignZeroLoss (class in pyEELSMODEL.operators.aligns.alignzeroloss)

allTags (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) apply_dark() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) apply_dark_and_gain() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) AreaSelection (class in pyEELSMODEL.operators.areaselection) autofit() (pyEELSMODEL.components.exponential.Exponential method) (pyEELSMODEL.components.powerlaw.PowerLaw method) autofit1() (pyEELSMODEL.components.powerlaw.PowerLaw method) autofit_() (pyEELSMODEL.components.powerlaw.PowerLaw method) autofit_areas() (pyEELSMODEL.components.powerlaw.PowerLaw method) autofit_matrix() (pyEELSMODEL.components.powerlaw.PowerLaw method) autofit_twowindow() (pyEELSMODEL.components.powerlaw.PowerLaw method)

B

BackgroundRemoval (class in pyEELSMODEL.operators.backgroundremoval) bad_index() (pyEELSMODEL.core.spectrum.Spectrum method)

boundaryOK() (pyEELSMODEL.core.parameter.Parameter method) bounds_lsq() (pyEELSMODEL.fitters.lsqfitter.LSQFitter method)

C

c() (in module pyEELSMODEL.misc.physical_constants) calculate() (pyEELSMODEL.components.afterglow.AfterGlow method) (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) (pyEELSMODEL.components.exponential.Exponential method) (pyEELSMODEL.components.fast_background.FastBG2 method) (pyEELSMODEL.components.fast_background.FastBG3 method) (pyEELSMODEL.components.fixedpattern.FixedPattern method) (pyEELSMODEL.components.gaussian.Gaussian method) (pyEELSMODEL.components.gdoslin.GDOSLin method) (pyEELSMODEL.components.linear.Linear method) (pyEELSMODEL.components.linear_background.LinearBG method) (pyEELSMODEL.components.lorentzian.Lorentzian method) (pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method) (pyEELSMODEL.components.MScatter.mscatter.Mscatter method) (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method) (pyEELSMODEL.components.offset.Offset method) (pyEELSMODEL.components.plasmon.Plasmon method) (pyEELSMODEL.components.polynomial.Polynomial method) (pyEELSMODEL.components.powerlaw.PowerLaw method) (pyEELSMODEL.components.voigt.Voigt method) (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) calculate_A_matrix() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method) (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) calculate_cross_section() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.CLedge.dummymodel.DummyEdge method) (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method) (pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) calculate_derivmatrix() (pyEELSMODEL.core.fitter.Fitter method) calculate_integral_per_parameter() (pyEELSMODEL.components.gdoslin.GDOSLin method) calculate_mask_from_coords() (pyEELSMODEL.operators.areaselection.AreaSelection method)

calculate_model() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) calculate_multi() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) calculate_plasmon() (pyEELSMODEL.components.plasmon.Plasmon method) calculate_raw() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method) calculate_spectra() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) calculate_w_padding() (pyEELSMODEL.components.MScatter.mscatterfft.MscatterFFT method) calculate_weights() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) calculate_y_vector() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) calibrate_energy_axis() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method) CalibrateSpectrum (class in pyEELSMODEL.operators.calibratespectrum) candolintrick() (pyEELSMODEL.core.fitter.Fitter method) characteristic_angle() (in module pyEELSMODEL.misc.physical_constants) check_maximum_edge() (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) check_multispectra_validity() (pyEELSMODEL.operators.splice.Splice method) check_valid_other_spectra() (pyEELSMODEL.operators.aligns.align.Align method) Component (class in pyEELSMODEL.core.component) componentshow() (pyEELSMODEL.core.model.Model method) connect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) convergence_correction_factor() (in module pyEELSMODEL.misc.hydrogen_gdos) convexity_constraints_necessary() (pyEELSMODEL.components.linear_background.LinearBG method) convexity_constraints_nonneg() (pyEELSMODEL.components.linear_background.LinearBG method) convexity_constraints_sufficient() (pyEELSMODEL.components.linear_background.LinearBG method) convolute_A_matrix() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) convolute_A_matrix_() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) copy() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.parameter.Parameter method) (pyEELSMODEL.core.spectrum.Spectrum method) CoreLossEdge (class in pyEELSMODEL.components.CLedge.coreloss_edge) CoreLossSimulator (class in pyEELSMODEL.operators.simulator.coreloss_simulator) correction_factor_kohl() (in module pyEELSMODEL.misc.hydrogen_gdos) correlationmap (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property) couple() (pyEELSMODEL.core.parameter.Parameter method) couple_parameter_to_edge() (pyEELSMODEL.components.gdoslin.GDOSLin method) covariance_matrix (pyEELSMODEL.core.fitter.Fitter property) createmodelinfo() (pyEELSMODEL.core.fitter.Fitter method) CRLB() (pyEELSMODEL.core.fitter.Fitter method) CRLB_map() (pyEELSMODEL.core.fitter.Fitter method) CRLB_ratio() (pyEELSMODEL.core.fitter.Fitter method)

D

dataOffset (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) dataShape (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) dataSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) dataType (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) dec2bin() (in module pyEELSMODEL.components.linear_background) Deconvolution (class in pyEELSMODEL.operators.deconvolutions.deconvolution) deconvolve() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method) (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method) define_new_region() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) degreesoffreedom() (pyEELSMODEL.core.fitter.Fitter method) determine_edge_positions() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method) determine_fast_fit_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) determine_fast_shift() (pyEELSMODEL.operators.aligns.fastalignzeroloss.FastAlignZeroLoss method) determine_input_area() (pyEELSMODEL.operators.areaselection.AreaSelection method)

determine_multi_fast_fit_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) determine_shift() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method) disconnect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) dispersion (pyEELSMODEL.core.spectrum.Spectrum property) dmReader() (in module pyEELSMODEL.io_tools.dm_ncempy) do_linear_fitting (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) do_procedure() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) dolintrick() (pyEELSMODEL.core.fitter.Fitter method) dsigma_dE_from_GOSarray() (in module pyEELSMODEL.misc.hs_gdos) dsigma_dE_from_GOSarray_approx() (in module pyEELSMODEL.misc.hs_gdos) dsigma_dE_from_GOSarray_bound() (in module pyEELSMODEL.misc.hs_gdos) dsigma_dE_HS() (in module pyEELSMODEL.misc.hs_gdos) dsigma_dE_hydrogenic() (in module pyEELSMODEL.misc.hydrogen_gdos) DummyEdge (class in pyEELSMODEL.components.CLedge.dummymodel) DummyEdgeCombined (class in pyEELSMODEL.components.CLedge.dummymodelcombined)

E

e() (in module pyEELSMODEL.misc.physical_constants) edge_by_onset() (pyEELSMODEL.components.CLedge.dummymodel.DummyEdge class method) ElementalQuantification (class in pyEELSMODEL.operators.quantification.elemental_quantification) energy_axis (pyEELSMODEL.core.spectrum.Spectrum property) erase() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) eshift (pyEELSMODEL.core.spectrum.Spectrum property) estimate_autofit_powerlaw() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) estimate_sampling() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)

estimate_start_param() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) estimate_start_param_multi() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) estimate_start_parameters() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) estimator (pyEELSMODEL.fitters.lsqfitter.LSQFitter property) (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property) ExperimentalEdgeExtractor (class in pyEELSMODEL.operators.quantification.extract_experimental_edge) Exponential (class in pyEELSMODEL.components.exponential) exponential_function() (pyEELSMODEL.components.exponential.Exponential method) extract_edge() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) extract_vacuum() (pyEELSMODEL.operators.estimate_thickness.ThicknessEstimator method)

F

fast_align() (pyEELSMODEL.operators.aligns.align.Align method) fast_background() (pyEELSMODEL.components.fast_background.FastBG2 method) fast_background3() (pyEELSMODEL.components.fast_background.FastBG3 method) fast_calculate_multi() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) fast_fit (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) FastAlignZeroLoss (class in pyEELSMODEL.operators.aligns.fastalignzeroloss) FastBG2 (class in pyEELSMODEL.components.fast_background) FastBG3 (class in pyEELSMODEL.components.fast_background) fft_phys() (in module pyEELSMODEL.operators.deconvolutions.gaussianmodifier) fid (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) file_name (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) file_path (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) fileDM (class in pyEELSMODEL.io_tools.dm_ncempy) fileSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)

firstderivative() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) fit_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) fit_align_other() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) fit_zlp() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) Fitter (class in pyEELSMODEL.core.fitter) fitter (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss property) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property) fittertype (pyEELSMODEL.core.fitter.Fitter property) FixedPattern (class in pyEELSMODEL.components.fixedpattern) from_numpy() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method) (pyEELSMODEL.core.spectrum.Spectrum class method) fromfile() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)

G

gamma() (in module pyEELSMODEL.misc.physical_constants) Gaussian (class in pyEELSMODEL.components.gaussian) gaussian() (in module pyEELSMODEL.misc.hs_gdos) gaussian_3d() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) gaussian_function() (pyEELSMODEL.components.gaussian.Gaussian method) GaussianModifier (class in pyEELSMODEL.operators.deconvolutions.gaussianmodifier) gaussianmodifier() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method) gaussiansmooth() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) gdos_k() (in module pyEELSMODEL.misc.hydrogen_gdos) gdos_l() (in module pyEELSMODEL.misc.hydrogen_gdos) GDOSLin (class in pyEELSMODEL.components.gdoslin) gdoslin_from_edge() (pyEELSMODEL.components.gdoslin.GDOSLin class method) get_background() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) get_background_model() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) get_bounds() (pyEELSMODEL.core.fitter.Fitter method) get_convergence_correction_factor() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) get_convex_boundaries() (pyEELSMODEL.components.linear_background.LinearBG method) get_CRLB() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) get_EK() (in module pyEELSMODEL.misc.hydrogen_gdos) get_elemental_maps() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) get_elements() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) get_elements_dir() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) get_energy_index() (pyEELSMODEL.core.spectrum.Spectrum method) get_experimental_edge() (pyEELSMODEL.core.fitter.Fitter method) get_figname() (pyEELSMODEL.misc.pdf_maker.PDF method) get_first_higher_then() (pyEELSMODEL.core.spectrum.Spectrum method) get_fitting_parameters() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) get_fwhm() (pyEELSMODEL.components.voigt.Voigt method) get_IE1() (in module pyEELSMODEL.misc.hydrogen_gdos) get_IE3() (in module pyEELSMODEL.misc.hydrogen_gdos) get_indextitle() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) get_interval() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) get_ismultiplier() (pyEELSMODEL.core.component.Component method) get_jump_ratio_map() (pyEELSMODEL.core.fitter.Fitter method) get_map() (pyEELSMODEL.core.fitter.Fitter method) get_map_results() (pyEELSMODEL.core.fitter.Fitter method) get_max() (pyEELSMODEL.core.spectrum.Spectrum method) get_mean_from_area() (pyEELSMODEL.operators.areaselection.AreaSelection method) get_min() (pyEELSMODEL.core.spectrum.Spectrum method) get_multimodels() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) get_multispectrumshape() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) get_new_energy_axis() (pyEELSMODEL.operators.splice.Splice method) get_numerical_fwhm() (pyEELSMODEL.core.spectrum.Spectrum method) get_param_index() (pyEELSMODEL.core.fitter.Fitter method) get_powerLaw_extrapolation() (in module pyEELSMODEL.misc.hs_gdos) get_qmin_max() (in module pyEELSMODEL.misc.hydrogen_gdos) get_rlist() (pyEELSMODEL.components.linear_background.LinearBG method) get_savename() (pyEELSMODEL.misc.pdf_maker.PDF method) get_specparameters() (pyEELSMODEL.core.spectrum.Spectrum method) get_spectrumshape() (pyEELSMODEL.core.spectrum.Spectrum method) get_start_parameters() (pyEELSMODEL.core.fitter.Fitter method) get_time_name() (pyEELSMODEL.misc.pdf_maker.PDF method) get_XU() (in module pyEELSMODEL.misc.hydrogen_gdos) getallparameters() (pyEELSMODEL.core.model.Model method) getcanconvolute() (pyEELSMODEL.core.component.Component method) getcomponentbyparameter() (pyEELSMODEL.core.model.Model method) getcomponents() (pyEELSMODEL.core.model.Model method)

getcontroller() (pyEELSMODEL.core.parameter.Parameter method) getconvolutor() (pyEELSMODEL.core.model.Model method) getcouplingfactor() (pyEELSMODEL.core.parameter.Parameter method) getDataset() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) getdescription() (pyEELSMODEL.core.component.Component method) getdisplayname() (pyEELSMODEL.core.component.Component method) getdolintrick() (pyEELSMODEL.core.fitter.Fitter method) getdoresidual() (pyEELSMODEL.core.fitter.Fitter method) geteshift() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) getfreelinparameters() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) getfreenonlinparameters() (pyEELSMODEL.core.model.Model method) getfreeparameters() (pyEELSMODEL.core.model.Model method) getgosenergy() (in module pyEELSMODEL.misc.hs_gdos) getgosq() (in module pyEELSMODEL.misc.hs_gdos) getgradient() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.exponential.Exponential method) (pyEELSMODEL.components.fast_background.FastBG2 method) (pyEELSMODEL.components.fast_background.FastBG3 method) (pyEELSMODEL.components.fixedpattern.FixedPattern method) (pyEELSMODEL.components.gaussian.Gaussian method) (pyEELSMODEL.components.linear.Linear method) (pyEELSMODEL.components.linear_background.LinearBG method) (pyEELSMODEL.components.lorentzian.Lorentzian method) (pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method) (pyEELSMODEL.components.offset.Offset method) (pyEELSMODEL.components.polynomial.Polynomial method) (pyEELSMODEL.components.powerlaw.PowerLaw method) (pyEELSMODEL.components.voigt.Voigt method) (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) gethasgradient() (pyEELSMODEL.core.parameter.Parameter method) gethasmultiplier() (pyEELSMODEL.core.component.Component method) getinterpolatedgos() (in module pyEELSMODEL.misc.hs_gdos) getinterpolatedq() (in module pyEELSMODEL.misc.hs_gdos) getlabelist() (pyEELSMODEL.core.fitter.Fitter method) getlowerbound() (pyEELSMODEL.core.parameter.Parameter method) getmaxenergy() (pyEELSMODEL.core.spectrum.Spectrum method) getmaxindex() (pyEELSMODEL.core.spectrum.Spectrum method) getMemmap() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) getMetadata() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) getmultiplier() (pyEELSMODEL.core.component.Component method) getname() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.parameter.Parameter method) getnonexcludedpoints() (pyEELSMODEL.core.spectrum.Spectrum method) getnumcomponents() (pyEELSMODEL.core.model.Model method) getnumfreeparameters() (pyEELSMODEL.core.model.Model method) getnumparameters() (pyEELSMODEL.core.model.Model method) getparameter() (pyEELSMODEL.core.component.Component method) getprogress() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) getpurename() (pyEELSMODEL.core.parameter.Parameter method) getshifter() (pyEELSMODEL.core.component.Component method) getSlice() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) getspectrumshape() (pyEELSMODEL.core.multispectrum.MultiSpectrumshape method) getstatus() (pyEELSMODEL.core.fitter.Fitter method) getThumbnail() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) gettolerance() (pyEELSMODEL.core.fitter.Fitter method) getupperbound() (pyEELSMODEL.core.parameter.Parameter method) getvalue() (pyEELSMODEL.core.parameter.Parameter method)

H

h() (in module pyEELSMODEL.misc.physical_constants) harmonic_space() (in module pyEELSMODEL.components.linear_background) has_parameter() (pyEELSMODEL.core.component.Component method) hasconvolutor() (pyEELSMODEL.core.model.Model method)

hasmultiplier() (pyEELSMODEL.core.model.Model method) hasshifter() (pyEELSMODEL.core.model.Model method) hbar() (in module pyEELSMODEL.misc.physical_constants) HydrogenicCoreLossEdge (class in pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge)

I

ifft_phys() (in module pyEELSMODEL.operators.deconvolutions.gaussianmodifier) include_areas() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) index_shift (pyEELSMODEL.operators.aligns.align.Align property) indexOK() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.multispectrum.MultiSpectrum method) information_matrix (pyEELSMODEL.core.fitter.Fitter property) init_poisson_error() (pyEELSMODEL.core.spectrum.Spectrum method) initDOS() (pyEELSMODEL.components.gdoslin.GDOSLin method) input_map (pyEELSMODEL.operators.areaselection.AreaSelection property) integrate() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) interactivevalue() (pyEELSMODEL.core.parameter.Parameter method)

interp (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property) interp_to_other_energy_axis() (pyEELSMODEL.core.spectrum.Spectrum method) interpolate_int() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method) intitialize() (pyEELSMODEL.misc.pdf_maker.PDF method) isbound() (pyEELSMODEL.core.parameter.Parameter method) ischangeable() (pyEELSMODEL.core.parameter.Parameter method) ischanged() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.core.parameter.Parameter method) iscoupled() (pyEELSMODEL.core.parameter.Parameter method) isdisplayed() (pyEELSMODEL.core.parameter.Parameter method) islinear() (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.core.parameter.Parameter method) islocked() (pyEELSMODEL.core.model.Model method) iterations (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution property)

J

jacobian (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property) jacobian_LSQ() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method)

jacobian_ML() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method) joule_to_eV() (in module pyEELSMODEL.misc.physical_constants)

K

KohlLossEdge (class in pyEELSMODEL.components.CLedge.kohl_coreloss_edge)

KohlLossEdgeCombined (class in pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined)

L

likelihood_ratio() (pyEELSMODEL.core.fitter.Fitter method) Linear (class in pyEELSMODEL.components.linear) linear_background() (pyEELSMODEL.components.linear_background.LinearBG method) linear_function() (pyEELSMODEL.components.linear.Linear method) linear_interpolation() (in module pyEELSMODEL.misc.hs_gdos) LinearBG (class in pyEELSMODEL.components.linear_background) LinearFitter (class in pyEELSMODEL.fitters.linear_fitter) load() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method) (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.multispectrum.MultiSpectrum class method) (pyEELSMODEL.core.spectrum.Spectrum class method) load_dm() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method) (pyEELSMODEL.core.spectrum.Spectrum class method) load_elements_and_edges() (in module pyEELSMODEL.io_tools.hdf5_io) load_h5py() (in module pyEELSMODEL.io_tools.hdf5_io)

load_hdf5() (pyEELSMODEL.core.multispectrum.MultiSpectrum class method) (pyEELSMODEL.core.spectrum.Spectrum class method) load_hspy() (in module pyEELSMODEL.io_tools.hdf5_io) (pyEELSMODEL.core.multispectrum.MultiSpectrum class method) (pyEELSMODEL.core.spectrum.Spectrum class method) loadmsa() (pyEELSMODEL.core.spectrum.Spectrum class method) lock() (pyEELSMODEL.core.model.Model method) log_ratio_method() (pyEELSMODEL.operators.estimate_thickness.ThicknessEstimator method) lorentz() (pyEELSMODEL.components.lorentzian.Lorentzian method) lorentz_sq() (pyEELSMODEL.components.lorentzian_sq.Lorentzian_sq method) Lorentzian (class in pyEELSMODEL.components.lorentzian) Lorentzian_sq (class in pyEELSMODEL.components.lorentzian_sq) LRtestconfidence() (pyEELSMODEL.core.fitter.Fitter method) LRtestconfidence_string() (pyEELSMODEL.core.fitter.Fitter method) lsq_function() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method) LSQFitter (class in pyEELSMODEL.fitters.lsqfitter)

M

m0() (in module pyEELSMODEL.misc.physical_constants) main() (in module pyEELSMODEL.tests.component_tests.test_corelossedge) (in module pyEELSMODEL.tests.component_tests.test_exponential) (in module pyEELSMODEL.tests.component_tests.test_fixedpattern) (in module pyEELSMODEL.tests.component_tests.test_gaussian) (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge) (in module pyEELSMODEL.tests.component_tests.test_polynomial) (in module pyEELSMODEL.tests.component_tests.test_powerlaw) (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) (in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter) (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter) (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_background_removal) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) make_artificial_dataset() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) make_background() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) make_background_model() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) make_circular_mask() (in module pyEELSMODEL.misc.data_simulator) make_coreloss() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) make_elements() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) make_finestructure() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) make_fitter() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) make_lowloss() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) make_model() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) make_mscatter() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) make_multispectrum() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) (in module pyEELSMODEL.tests.operator_tests.test_background_removal) make_multispectrum_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) make_pdf_result() (pyEELSMODEL.operators.aligns.align.Align method) make_rectangular_mask() (in module pyEELSMODEL.misc.data_simulator) make_zeroloss_model() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) manageparameters() (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) map_to_line() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) mask (pyEELSMODEL.operators.areaselection.AreaSelection property) max_points (pyEELSMODEL.operators.areaselection.AreaSelection property) mean() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) metadata (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) method (pyEELSMODEL.fitters.lsqfitter.LSQFitter property) (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter property) MinimizeFitter (class in pyEELSMODEL.fitters.minimizefitter) mirrored_zlp() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) MLE_function() (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method) Model (class in pyEELSMODEL.core.model) model (pyEELSMODEL.core.fitter.Fitter property) (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss property) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property) model_to_multispectrum() (pyEELSMODEL.core.fitter.Fitter method) model_to_multispectrum_with_comps() (pyEELSMODEL.core.fitter.Fitter method) model_to_multispectrum_without_comps() (pyEELSMODEL.core.fitter.Fitter method) model_type (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property) modified_fixedpattern() (pyEELSMODEL.components.fixedpattern.FixedPattern method) module pyEELSMODEL.components pyEELSMODEL.components.afterglow pyEELSMODEL.components.CLedge pyEELSMODEL.components.CLedge.coreloss_edge pyEELSMODEL.components.CLedge.dummymodel pyEELSMODEL.components.CLedge.dummymodelcombined pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge pyEELSMODEL.components.CLedge.kohl_coreloss_edge pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined pyEELSMODEL.components.CLedge.zezhong_coreloss_edge pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined pyEELSMODEL.components.exponential pyEELSMODEL.components.fast_background pyEELSMODEL.components.fixedpattern pyEELSMODEL.components.gaussian pyEELSMODEL.components.gdoslin pyEELSMODEL.components.linear pyEELSMODEL.components.linear_background pyEELSMODEL.components.lorentzian pyEELSMODEL.components.lorentzian_sq pyEELSMODEL.components.MScatter pyEELSMODEL.components.MScatter.mscatter pyEELSMODEL.components.MScatter.mscatterfft pyEELSMODEL.components.offset pyEELSMODEL.components.plasmon pyEELSMODEL.components.polynomial pyEELSMODEL.components.powerlaw pyEELSMODEL.components.voigt pyEELSMODEL.core pyEELSMODEL.core.component pyEELSMODEL.core.fitter pyEELSMODEL.core.model pyEELSMODEL.core.multispectrum pyEELSMODEL.core.operator pyEELSMODEL.core.parameter pyEELSMODEL.core.spectrum pyEELSMODEL.fitters pyEELSMODEL.fitters.linear_fitter pyEELSMODEL.fitters.lsqfitter pyEELSMODEL.fitters.minimizefitter pyEELSMODEL.io_tools pyEELSMODEL.io_tools.dm_ncempy pyEELSMODEL.io_tools.hdf5_io pyEELSMODEL.misc pyEELSMODEL.misc.data_simulator pyEELSMODEL.misc.hs_gdos pyEELSMODEL.misc.hydrogen_gdos pyEELSMODEL.misc.pdf_maker pyEELSMODEL.misc.physical_constants pyEELSMODEL.operators pyEELSMODEL.operators.aligns pyEELSMODEL.operators.aligns.align pyEELSMODEL.operators.aligns.aligncrosscorrelation pyEELSMODEL.operators.aligns.alignzeroloss pyEELSMODEL.operators.aligns.fastalignzeroloss pyEELSMODEL.operators.areaselection pyEELSMODEL.operators.backgroundremoval pyEELSMODEL.operators.calibratespectrum pyEELSMODEL.operators.deconvolutions pyEELSMODEL.operators.deconvolutions.deconvolution pyEELSMODEL.operators.deconvolutions.gaussianmodifier pyEELSMODEL.operators.deconvolutions.richardson_lucy pyEELSMODEL.operators.estimate_thickness pyEELSMODEL.operators.multispectrumvisualizer pyEELSMODEL.operators.quantification pyEELSMODEL.operators.quantification.elemental_quantification pyEELSMODEL.operators.quantification.extract_experimental_edge pyEELSMODEL.operators.simulator pyEELSMODEL.operators.simulator.coreloss_simulator pyEELSMODEL.operators.splice pyEELSMODEL.operators.zlpremoval pyEELSMODEL.tests pyEELSMODEL.tests.component_tests pyEELSMODEL.tests.component_tests.test_corelossedge pyEELSMODEL.tests.component_tests.test_exponential pyEELSMODEL.tests.component_tests.test_fixedpattern pyEELSMODEL.tests.component_tests.test_gaussian pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge pyEELSMODEL.tests.component_tests.test_polynomial pyEELSMODEL.tests.component_tests.test_powerlaw pyEELSMODEL.tests.fitter_tests pyEELSMODEL.tests.fitter_tests.test_linearfit pyEELSMODEL.tests.fitter_tests.test_lsqfitter pyEELSMODEL.tests.fitter_tests.test_minimizefitter pyEELSMODEL.tests.io_tools_tests pyEELSMODEL.tests.operator_tests pyEELSMODEL.tests.operator_tests.test_align_cross_correlation pyEELSMODEL.tests.operator_tests.test_background_removal pyEELSMODEL.tests.operator_tests.test_zero_loss_align

Mscatter (class in pyEELSMODEL.components.MScatter.mscatter) MscatterFFT (class in pyEELSMODEL.components.MScatter.mscatterfft) multi_deconvolve() (pyEELSMODEL.operators.deconvolutions.gaussianmodifier.GaussianModifier method) (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method) multi_fast_fit (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) multi_fit() (pyEELSMODEL.core.fitter.Fitter method) multi_likelihood_ratio() (pyEELSMODEL.core.fitter.Fitter method) multi_LRtestconficence() (pyEELSMODEL.core.fitter.Fitter method) multidata (pyEELSMODEL.core.multispectrum.MultiSpectrum property) MultiSpectrum (class in pyEELSMODEL.core.multispectrum) MultiSpectrumIterator (class in pyEELSMODEL.core.multispectrum) MultiSpectrumshape (class in pyEELSMODEL.core.multispectrum) MultiSpectrumVisualizer (class in pyEELSMODEL.operators.multispectrumvisualizer)

N

non_linear_fitter (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) normalise() (pyEELSMODEL.core.spectrum.Spectrum method)

numerical_partial_derivative() (pyEELSMODEL.core.fitter.Fitter method) numObjects (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)

O

Offset (class in pyEELSMODEL.components.offset) offset (pyEELSMODEL.core.spectrum.Spectrum property) on_key_press() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) on_memory (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) on_motion() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)

on_press() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) on_release() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) Operator (class in pyEELSMODEL.core.operator) order (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) order_coupled_components() (pyEELSMODEL.core.model.Model method) origin (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)

P

padding() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method) (pyEELSMODEL.core.spectrum.Spectrum method) (pyEELSMODEL.operators.deconvolutions.deconvolution.Deconvolution method) Parameter (class in pyEELSMODEL.core.parameter) parseHeader() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) partial_derivative() (pyEELSMODEL.core.fitter.Fitter method) (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) PDF (class in pyEELSMODEL.misc.pdf_maker) pearson_correlation_matrix() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) perform_alignment() (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation method) (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) (pyEELSMODEL.operators.aligns.fastalignzeroloss.FastAlignZeroLoss method) perform_fit() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) (pyEELSMODEL.fitters.lsqfitter.LSQFitter method) (pyEELSMODEL.fitters.minimizefitter.MinimizeFitter method) Plasmon (class in pyEELSMODEL.components.plasmon) plasmon_function() (pyEELSMODEL.components.plasmon.Plasmon method) plot() (pyEELSMODEL.core.fitter.Fitter method) (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) plotrect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) poisson_fraction() (pyEELSMODEL.components.plasmon.Plasmon method) Polynomial (class in pyEELSMODEL.components.polynomial) PowerLaw (class in pyEELSMODEL.components.powerlaw) powerlaw() (in module pyEELSMODEL.misc.hs_gdos) (pyEELSMODEL.components.powerlaw.PowerLaw method) pppc (pyEELSMODEL.core.spectrum.Spectrum property) prepare() (pyEELSMODEL.core.model.Model method) print_parameter_values() (pyEELSMODEL.core.component.Component method) printall() (pyEELSMODEL.core.parameter.Parameter method) printcomponents() (pyEELSMODEL.core.model.Model method) pyEELSMODEL.components module pyEELSMODEL.components.afterglow module pyEELSMODEL.components.CLedge module pyEELSMODEL.components.CLedge.coreloss_edge module pyEELSMODEL.components.CLedge.dummymodel module pyEELSMODEL.components.CLedge.dummymodelcombined module pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge module pyEELSMODEL.components.CLedge.kohl_coreloss_edge module pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined module pyEELSMODEL.components.CLedge.zezhong_coreloss_edge module pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined module pyEELSMODEL.components.exponential module pyEELSMODEL.components.fast_background module pyEELSMODEL.components.fixedpattern module pyEELSMODEL.components.gaussian module pyEELSMODEL.components.gdoslin module pyEELSMODEL.components.linear module pyEELSMODEL.components.linear_background module pyEELSMODEL.components.lorentzian module pyEELSMODEL.components.lorentzian_sq module pyEELSMODEL.components.MScatter module pyEELSMODEL.components.MScatter.mscatter module pyEELSMODEL.components.MScatter.mscatterfft module pyEELSMODEL.components.offset module pyEELSMODEL.components.plasmon module pyEELSMODEL.components.polynomial module pyEELSMODEL.components.powerlaw module pyEELSMODEL.components.voigt module pyEELSMODEL.core module pyEELSMODEL.core.component module pyEELSMODEL.core.fitter module pyEELSMODEL.core.model module pyEELSMODEL.core.multispectrum module pyEELSMODEL.core.operator module pyEELSMODEL.core.parameter module pyEELSMODEL.core.spectrum module

pyEELSMODEL.fitters module pyEELSMODEL.fitters.linear_fitter module pyEELSMODEL.fitters.lsqfitter module pyEELSMODEL.fitters.minimizefitter module pyEELSMODEL.io_tools module pyEELSMODEL.io_tools.dm_ncempy module pyEELSMODEL.io_tools.hdf5_io module pyEELSMODEL.misc module pyEELSMODEL.misc.data_simulator module pyEELSMODEL.misc.hs_gdos module pyEELSMODEL.misc.hydrogen_gdos module pyEELSMODEL.misc.pdf_maker module pyEELSMODEL.misc.physical_constants module pyEELSMODEL.operators module pyEELSMODEL.operators.aligns module pyEELSMODEL.operators.aligns.align module pyEELSMODEL.operators.aligns.aligncrosscorrelation module pyEELSMODEL.operators.aligns.alignzeroloss module pyEELSMODEL.operators.aligns.fastalignzeroloss module pyEELSMODEL.operators.areaselection module pyEELSMODEL.operators.backgroundremoval module pyEELSMODEL.operators.calibratespectrum module pyEELSMODEL.operators.deconvolutions module pyEELSMODEL.operators.deconvolutions.deconvolution module pyEELSMODEL.operators.deconvolutions.gaussianmodifier module pyEELSMODEL.operators.deconvolutions.richardson_lucy module pyEELSMODEL.operators.estimate_thickness module pyEELSMODEL.operators.multispectrumvisualizer module pyEELSMODEL.operators.quantification module pyEELSMODEL.operators.quantification.elemental_quantification module pyEELSMODEL.operators.quantification.extract_experimental_edge module pyEELSMODEL.operators.simulator module pyEELSMODEL.operators.simulator.coreloss_simulator module pyEELSMODEL.operators.splice module pyEELSMODEL.operators.zlpremoval module pyEELSMODEL.tests module pyEELSMODEL.tests.component_tests module pyEELSMODEL.tests.component_tests.test_corelossedge module pyEELSMODEL.tests.component_tests.test_exponential module pyEELSMODEL.tests.component_tests.test_fixedpattern module pyEELSMODEL.tests.component_tests.test_gaussian module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge module pyEELSMODEL.tests.component_tests.test_polynomial module pyEELSMODEL.tests.component_tests.test_powerlaw module pyEELSMODEL.tests.fitter_tests module pyEELSMODEL.tests.fitter_tests.test_linearfit module pyEELSMODEL.tests.fitter_tests.test_lsqfitter module pyEELSMODEL.tests.fitter_tests.test_minimizefitter module pyEELSMODEL.tests.io_tools_tests module pyEELSMODEL.tests.operator_tests module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation module pyEELSMODEL.tests.operator_tests.test_background_removal module pyEELSMODEL.tests.operator_tests.test_zero_loss_align module

Q

quantify_from_edge() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method)

R

R() (in module pyEELSMODEL.misc.physical_constants) rebin() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) recalibrate_spectrum() (pyEELSMODEL.core.spectrum.Spectrum method) reference (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property) release() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.core.parameter.Parameter method) releasecoupling() (pyEELSMODEL.core.parameter.Parameter method)

releasemultiplier() (pyEELSMODEL.core.component.Component method) removecomponent() (pyEELSMODEL.core.model.Model method) rescale_spectrum() (pyEELSMODEL.core.spectrum.Spectrum method) reset_exclude_region() (pyEELSMODEL.core.spectrum.Spectrum method) resetsigmas() (pyEELSMODEL.core.model.Model method) residuals() (pyEELSMODEL.fitters.lsqfitter.LSQFitter method) richardsonlucy() (pyEELSMODEL.operators.deconvolutions.richardson_lucy.RichardsonLucyDeconvolution method) RichardsonLucyDeconvolution (class in pyEELSMODEL.operators.deconvolutions.richardson_lucy)

S

save() (pyEELSMODEL.components.MScatter.mscatter.Mscatter method) (pyEELSMODEL.core.component.Component method) save_hdf5() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) savemodel() (pyEELSMODEL.core.model.Model method) saveparams() (pyEELSMODEL.core.model.Model method) scale (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) scaleOrigin (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) scaleUnit (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) secondderivative() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) seek() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) set_bounds() (pyEELSMODEL.core.fitter.Fitter method) set_dir_path() (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method) set_edge() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.CLedge.dummymodel.DummyEdge method) (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method) (pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) set_element() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method) set_exclude_region() (pyEELSMODEL.core.spectrum.Spectrum method) set_exclude_region_energy() (pyEELSMODEL.core.spectrum.Spectrum method) set_fit_type() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) set_fit_values() (pyEELSMODEL.core.fitter.Fitter method) set_fixeddata() (pyEELSMODEL.components.afterglow.AfterGlow method) (pyEELSMODEL.components.fixedpattern.FixedPattern method) set_gdos_name() (pyEELSMODEL.components.gdoslin.GDOSLin method) set_gos_energy_q() (pyEELSMODEL.components.CLedge.kohl_coreloss_edge.KohlLossEdge method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edge.ZezhongCoreLossEdge method) set_include_region() (pyEELSMODEL.core.spectrum.Spectrum method) set_include_region_energy() (pyEELSMODEL.core.spectrum.Spectrum method) set_indices() (pyEELSMODEL.operators.aligns.alignzeroloss.AlignZeroLoss method) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) set_information_matrix() (pyEELSMODEL.core.fitter.Fitter method) set_onset_edge_energies() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method) set_onset_energy() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) (pyEELSMODEL.components.CLedge.dummymodelcombined.DummyEdgeCombined method) (pyEELSMODEL.components.CLedge.hydrogen_coreloss_edge.HydrogenicCoreLossEdge method) (pyEELSMODEL.components.CLedge.kohl_coreloss_edgecombined.KohlLossEdgeCombined method) (pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined.ZezhongCoreLossEdgeCombined method) set_start_parameters() (pyEELSMODEL.core.fitter.Fitter method) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) set_Z() (pyEELSMODEL.components.CLedge.coreloss_edge.CoreLossEdge method) setboundaries() (pyEELSMODEL.core.parameter.Parameter method) setchangeable() (pyEELSMODEL.core.parameter.Parameter method) setchanged() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) (pyEELSMODEL.core.parameter.Parameter method) setcurrentfit() (pyEELSMODEL.core.fitter.Fitter method) setcurrentmeanspectrum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) setcurrentspectrum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) setdefaults() (pyEELSMODEL.core.parameter.Parameter method) setdescription() (pyEELSMODEL.core.component.Component method)

setdisplayed() (pyEELSMODEL.core.parameter.Parameter method) setdisplayname() (pyEELSMODEL.core.component.Component method) setdoresidual() (pyEELSMODEL.core.fitter.Fitter method) seteshift() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.model.Model method) setfraction() (pyEELSMODEL.core.fitter.Fitter method) sethasgradient() (pyEELSMODEL.core.parameter.Parameter method) sethasmultiplier() (pyEELSMODEL.core.component.Component method) setlinear() (pyEELSMODEL.core.parameter.Parameter method) setlowerbound() (pyEELSMODEL.core.parameter.Parameter method) setmaxstep() (pyEELSMODEL.core.fitter.Fitter method) setminstep() (pyEELSMODEL.core.fitter.Fitter method) setmultiplier() (pyEELSMODEL.core.component.Component method) setname() (pyEELSMODEL.core.parameter.Parameter method) (pyEELSMODEL.core.spectrum.Spectrum method) setnmax() (pyEELSMODEL.core.fitter.Fitter method) settolerance() (pyEELSMODEL.core.fitter.Fitter method) setunchanged() (pyEELSMODEL.core.component.Component method) (pyEELSMODEL.core.parameter.Parameter method) setupperbound() (pyEELSMODEL.core.parameter.Parameter method) setusegradients() (pyEELSMODEL.core.fitter.Fitter method) setvalue() (pyEELSMODEL.core.parameter.Parameter method) setvisible() (pyEELSMODEL.core.component.Component method) shift (pyEELSMODEL.operators.aligns.align.Align property) show() (pyEELSMODEL.core.component.Component method) show_alignment_result() (pyEELSMODEL.operators.aligns.align.Align method) show_area() (pyEELSMODEL.operators.areaselection.AreaSelection method) show_average_spectra() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) show_calibration_fit() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method) show_coefficients() (pyEELSMODEL.core.fitter.Fitter method) show_covariance_matrix() (pyEELSMODEL.core.fitter.Fitter method) show_elements_maps() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method) show_excluded_region() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) (pyEELSMODEL.core.spectrum.Spectrum method) show_fit_result() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) show_map_result() (pyEELSMODEL.core.fitter.Fitter method) show_mirror_result() (pyEELSMODEL.operators.zlpremoval.ZLPRemoval method) show_pearson_correlation() (pyEELSMODEL.fitters.linear_fitter.LinearFitter method) show_real_energies() (pyEELSMODEL.operators.calibratespectrum.CalibrateSpectrum method) show_regions() (pyEELSMODEL.operators.quantification.extract_experimental_edge.ExperimentalEdgeExtractor method) show_shift() (pyEELSMODEL.operators.aligns.align.Align method) show_signal_range() (pyEELSMODEL.operators.aligns.align.Align method) show_variance() (pyEELSMODEL.core.fitter.Fitter method) sigma (pyEELSMODEL.core.parameter.Parameter property) signal_range (pyEELSMODEL.operators.aligns.align.Align property) (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval property) (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property) simulate_data() (in module pyEELSMODEL.misc.data_simulator) simulate_multispectrum() (pyEELSMODEL.operators.simulator.coreloss_simulator.CoreLossSimulator method) Spectrum (class in pyEELSMODEL.core.spectrum) spectrum (pyEELSMODEL.operators.zlpremoval.ZLPRemoval property) Spectrumshape (class in pyEELSMODEL.core.spectrum) speed_electron() (in module pyEELSMODEL.misc.physical_constants) Splice (class in pyEELSMODEL.operators.splice) splice_multispectra() (pyEELSMODEL.operators.splice.Splice method) splice_spectra() (pyEELSMODEL.operators.splice.Splice method) stop() (pyEELSMODEL.operators.backgroundremoval.BackgroundRemoval method) subpixel (pyEELSMODEL.operators.aligns.aligncrosscorrelation.AlignCrossCorrelation property) sum() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) swap_xy() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)

T

T() (in module pyEELSMODEL.misc.physical_constants) tell() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method) test_A_matrix() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_align_crosscor() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) test_align_crosscor_zlp() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) test_background_subtraction() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_calculate() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge) test_CRLB() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter) test_cross_correlation() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_cross_correlation_signal_range() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_exponential() (in module pyEELSMODEL.tests.component_tests.test_exponential) test_exponential_autofit() (in module pyEELSMODEL.tests.component_tests.test_exponential) test_exponential_gradient() (in module pyEELSMODEL.tests.component_tests.test_exponential) test_fast_align() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_fast_align_1() (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_fast_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_fast_align_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) test_fast_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_fit_align() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_fit_align_crop() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) test_fit_align_lorentz() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_fit_align_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) test_fixed_pattern() (in module pyEELSMODEL.tests.component_tests.test_fixedpattern) test_fixed_pattern_gradient() (in module pyEELSMODEL.tests.component_tests.test_fixedpattern) test_gaussian() (in module pyEELSMODEL.tests.component_tests.test_gaussian) test_gaussian_gradient() (in module pyEELSMODEL.tests.component_tests.test_gaussian) test_gradient() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge)

test_include_areas() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_init() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_init_other() (in module pyEELSMODEL.tests.operator_tests.test_align_cross_correlation) (in module pyEELSMODEL.tests.operator_tests.test_zero_loss_align) test_jacobian() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter) test_LSQ_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter) test_make_model_type() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_MLE_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_minimizefitter) test_model_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_multifit() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_multifit_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_multifit_multiconvolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_nonlinear() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_perform_fit() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) (in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter) test_perform_fit_convolutor() (in module pyEELSMODEL.tests.fitter_tests.test_linearfit) test_polynomial() (in module pyEELSMODEL.tests.component_tests.test_polynomial) test_polynomial_gradient() (in module pyEELSMODEL.tests.component_tests.test_polynomial) test_powerlaw() (in module pyEELSMODEL.tests.component_tests.test_powerlaw) test_powerlaw_autofit() (in module pyEELSMODEL.tests.component_tests.test_powerlaw) test_powerlaw_gradient() (in module pyEELSMODEL.tests.component_tests.test_powerlaw) test_reset_exclude_after_fit() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_set_edge() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge) test_set_element() (in module pyEELSMODEL.tests.component_tests.test_corelossedge) test_set_fit_type() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_set_indices() (in module pyEELSMODEL.tests.operator_tests.test_background_removal) test_set_onset_energy() (in module pyEELSMODEL.tests.component_tests.test_hydogrenic_coreloss_edge) test_set_Z() (in module pyEELSMODEL.tests.component_tests.test_corelossedge) test_use_bounds() (in module pyEELSMODEL.tests.fitter_tests.test_lsqfitter) ThicknessEstimator (class in pyEELSMODEL.operators.estimate_thickness) thumbnail (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) to_logarithm() (pyEELSMODEL.core.multispectrum.MultiSpectrum method)

U

update_eels() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method) update_multispectra() (pyEELSMODEL.operators.aligns.align.Align method) updaterect() (pyEELSMODEL.operators.multispectrumvisualizer.MultiSpectrumVisualizer method)

upsample() (pyEELSMODEL.core.multispectrum.MultiSpectrum method) use_bounds (pyEELSMODEL.fitters.lsqfitter.LSQFitter property) usegradients (pyEELSMODEL.core.fitter.Fitter property)

V

verbose (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) visualize_autofit() (pyEELSMODEL.operators.quantification.elemental_quantification.ElementalQuantification method)

Voigt (class in pyEELSMODEL.components.voigt) voigt() (pyEELSMODEL.components.voigt.Voigt method)

W

weights (pyEELSMODEL.operators.splice.Splice property)

writeTags() (pyEELSMODEL.io_tools.dm_ncempy.fileDM method)

X

xSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)

Y

y_vector (pyEELSMODEL.fitters.linear_fitter.LinearFitter property)

ySize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)

Z

zero_index (pyEELSMODEL.operators.aligns.align.Align property) ZezhongCoreLossEdge (class in pyEELSMODEL.components.CLedge.zezhong_coreloss_edge) ZezhongCoreLossEdgeCombined (class in pyEELSMODEL.components.CLedge.zezhong_coreloss_edgecombined)

ZLPRemoval (class in pyEELSMODEL.operators.zlpremoval) Zs_k() (in module pyEELSMODEL.misc.physical_constants) zSize (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute) zSize2 (pyEELSMODEL.io_tools.dm_ncempy.fileDM attribute)